Category: BINF 6215

BINF 6215: Deposit your data in the SRA (Part 1: BioSamples)

BINF 6215: Deposit your data in the SRA (Part 1: BioSamples)

Since your class has created an interesting data set, we are going to work on creating an SRA submission for your chloroplast data. I recently built a submission for a set of sixteen Vibrio...

BINF 6215: Download and work with SRA data

BINF 6215: Download and work with SRA data

Refer back to this post for basic information about how to set up your machine with the right software and access the SRA. The tools you need (Aspera Connect, sratoolkit) should already be installed...

BINF 6215: Building a variant detection workflow in CLC

BINF 6215: Building a variant detection workflow in CLC

In this exercise, we’re going to work with the UNCC chloroplast genome data set again — the one you generated in the Genomics lab if you took that course. You did this workflow by...

BINF 6215: UNIX on your Mac

BINF 6215: UNIX on your Mac

The commands covered here are also (mostly) covered in Chapter 4 of Haddock and Dunn, should you need to review. There are two different ways to navigate around the same set of files on...

BINF 6215: Make your first workflow

BINF 6215: Make your first workflow

The first thing we’re going to do in this class is really simple. To start with, go to your Finder window. Go to the directory Applications: Utilities, find the Grab application, and open it....