Category: BINF 6215

BINF 6215: Taming Illumina datasets

BINF 6215: Taming Illumina datasets

As you’re uploading files to Galaxy or waiting for jobs to finish, you may be wondering “how can I make this go faster”? Scientists don’t like to throw out data, but Next Gen Sequencing...

BINF 6215: RNA-Seq in CLC Genomics

BINF 6215: RNA-Seq in CLC Genomics

OK — we’ve done a few exercises now where everything’s spelled out for you — this time you’re on your own.  You have access to a variety of bacterial RNA-Seq data sets. Legitimate things...

BINF 6215: Datasets

BINF 6215: Datasets

For practicing bioinformatics techniques in class, you can use any data set that’s not beyond the capacity of your computer. In practice that means that you probably want to use a bacterial NGS data set.

BINF 6215: Get your own Galaxy

BINF 6215: Get your own Galaxy

If you want to have some flexibility about what tools are available in your Galaxy instance, you can set up your own local instance. Remember that whatever you do with a local Galaxy instance...

BINF 6215: Know your UNIX

BINF 6215: Know your UNIX

Before we move on to scripting, we’ve got to get a handle on the rest of the basic UNIX commands covered in Chapters 4 and 5 of the book. What you already know On...

BINF 6215

BINF 6215

This is the game plan for BINF 6215 — Bioinformatics Pipeline Programming. Links to these posts will also be provided in Moodle, but this post will serve as a directory for the course. Links...