Category: macnutiae

Getting your Galaxy to point to a working executable

Getting your Galaxy to point to a working executable

I’m running my own Galaxy and I want to use it to run the SPAdes assembler as part of a Galaxy pipeline, instead of running SPAdes at my command line with shell scripts. Ostensibly,┬áthis...

BINF 6215: UNIX on your Mac

BINF 6215: UNIX on your Mac

The commands covered here are also (mostly) covered in Chapter 4 of Haddock and Dunn, should you need to review. There are two different ways to navigate around the same set of files on...

BINF 6215: Make your first workflow

BINF 6215: Make your first workflow

The first thing we’re going to do in this class is really simple. To start with, go to your Finder window. Go to the directory Applications: Utilities, find the Grab application, and open it....