Category: 23andme

BINF 2111: Genome Horoscope (eye color — part 2)

BINF 2111: Genome Horoscope (eye color — part 2)

Your mission for today is to write a script that checks a 23 and Me genotype file for several groups of SNPs that are associated with blue eyes. The SNPs in question are in...

BINF 2111: Genome Horoscope — eye color (Part 1)

BINF 2111: Genome Horoscope — eye color (Part 1)

In this week’s exercise, we’re going to practice loops and lists in Python by looping through a 23 and me file to pull out data that matches a list of SNPs of interest. Before...

BINF 2111: Genome Horoscope, Inc.

BINF 2111: Genome Horoscope, Inc.

Last week, you made a script that takes a “panel” of SNPs where a particular variant allele is associated with blue eyes in Europeans, parses an individual’s 23 and Me results to check their...

Getting your 23 and Me data into Galaxy

Getting your 23 and Me data into Galaxy

I just happen to have a file with 960,628 lines of personal SNP data from 23 and Me burning a hole in my hard drive. I’m one of the lucky people who gets 23...